Package: MatchAlign
Title: Parsing GFA and GAF Alignment Files
Version: 0.1.2
Authors@R: c(
    person("Camille R.", "Mazurek", , "camillemazurek23@gmail.com", role = c("aut", "cre")),
    person("Michael J.", "Tisza", role = "ctb"))
Maintainer: Camille R. Mazurek <camillemazurek23@gmail.com>
Description: Provides tools for extracting segment paths from Graphical
        Fragment Assembly ('GFA') and Graph Alignment Format ('GAF')
        files. parse_paths_gfa() reads P (path) and W (walk) records
        and returns a named list of segment identifiers for each
        accession. parse_paths_gaf() parses the path string from each
        alignment and returns a named list of segments traversed by
        each query. parse_segment_lengths_gfa() reads S records and
        returns a named list of segment lengths keyed by segment
        identifier. These tools are intended to simplify downstream
        interpretation and analysis of pangenome graphs.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
URL: https://github.com/cromazurek/MatchAlign
BugReports: https://github.com/cromazurek/MatchAlign/issues
Config/roxygen2/version: 8.0.0
Repository: https://cromazurek.r-universe.dev
Date/Publication: 2026-09-03 21:10:18 UTC
RemoteUrl: https://github.com/cromazurek/matchalign
RemoteRef: HEAD
RemoteSha: 343d511f8513294ab22fec05cf4986d4eab29a66
NeedsCompilation: no
Packaged: 2026-10-14 08:06:49 UTC; root
Author: Camille R. Mazurek [aut, cre],
  Michael J. Tisza [ctb]