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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "MatchAlign" in publications use:'
type: software
license: MIT
title: 'MatchAlign: Parsing GFA and GAF Alignment Files'
version: 0.1.2
doi: 10.32614/CRAN.package.MatchAlign
abstract: Provides tools for extracting segment paths from Graphical Fragment Assembly
  ('GFA') and Graph Alignment Format ('GAF') files. parse_paths_gfa() reads P (path)
  and W (walk) records and returns a named list of segment identifiers for each accession.
  parse_paths_gaf() parses the path string from each alignment and returns a named
  list of segments traversed by each query. parse_segment_lengths_gfa() reads S records
  and returns a named list of segment lengths keyed by segment identifier. These tools
  are intended to simplify downstream interpretation and analysis of pangenome graphs.
authors:
- family-names: Mazurek
  given-names: Camille R.
  email: camillemazurek23@gmail.com
repository: https://cromazurek.r-universe.dev
repository-code: https://github.com/cromazurek/MatchAlign
commit: 343d511f8513294ab22fec05cf4986d4eab29a66
url: https://github.com/cromazurek/MatchAlign
date-released: '2026-09-03'
contact:
- family-names: Mazurek
  given-names: Camille R.
  email: camillemazurek23@gmail.com